Merge gene expression from different platforms that was measured on the same biological samples.

Merge gene expression from different platforms that was measured on the same biological samples.

Usage

mergeMatchStudyData(
  ematAtomicList,
  studyMetadataAtomic,
  matchStudyColname,
  sampleMetadataAtomic,
  matchSampleColname,
  mergeFunc = function(x) mean(x, na.rm = TRUE)
)

Arguments

ematAtomicList

list of expression matrices.

studyMetadataAtomic

data frame for study metadata.

matchStudyColname

column in studyMetadataAtomic used to match studies.

sampleMetadataAtomic

data frame for sample metadata.

matchSampleColname

column in sampleMetadataAtomic used to match samples.

mergeFunc

function to summarize multiple gene expression values.

Value

A named list.

ematList

Named list of expression matrices.

studyMetadata

data.frame of study metadata.

sampleMetadata

data.frame of sample metadata.